> PLPR0307 ..AC:U40708.1 ..OS:Oryza sativa (indica cultivar-group) ..GENE:Osgrp-2 ..PROD:glycine-rich cell wall protein ..[ -200: +51] ..CDS: +47 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.22 C - 0.30
1 gtcaaaaaga attaaaggac aacagctact ggcactctcc atgaactctc
51 ctggtcatca tttcacaccc atatactgtg tccaaagtcc aaaagctcta
101 acgtctctag ttttggacca tgcagactga tgaacatctg atgagatagc
151 catacacgag atgcacccTA TAAATAcccc agctcccctt cactccaacc
201 ACACTACCCA GCTCACTGAA GTAGCAACGC AGCTCATCAG TGTCAAGATG
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00943 Mean Expected Number 0.005 +strand -143 : -133 TCATTTCACAc
AC RSP01296 Mean Expected Number 0.002 +strand -33 : -25 CTATAAATA
AC RSP01301 Mean Expected Number 0.001 +strand -33 : -24 CTATAAATAC
AC RSP01596 Mean Expected Number 0.005 -strand -133 : -143 gTGTGAAATGA
Totally 4 motifs of 4 different REs have been found
Description of REs found
872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302
1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown
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