> PLPR0310 ..AC:AY267899.1 ..OS:Nicotiana plumbaginifolia ..GENE:ABC1 ..PROD:plasma membrane ATP-binding cassette (ABC) transporter ..[ -200: +51] ..CDS: +110 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.35 G - 0.09 T - 0.34 C - 0.22
1 atagaagttt cctctacaac tactgtatac gtcaaataat tcaaattaaa
51 ttcgtcaaaa tattaggtca ataattccaa agaccaaagt actatgcatg
101 tatacgacca attaaaaatt aaaACAATgc tatagccgcc ccttcctctt
151 tgctgcTATA TAATaccttc tccttagaca actaacctta acttctcctt
201 CTATTCTTTT GTTCTTGTAA TAAAGAAGAT TACACTAATT TCACATTTTC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00030 Mean Expected Number 0.002 +strand -67 : -61 AGCCGCC
AC RSP00203 Mean Expected Number 0.003 +strand -175 : -166 TATACGTCAa
AC RSP00438 Mean Expected Number 0.004 -strand -61 : -66 GGCGGC
AC RSP00807 Mean Expected Number 0.004 +strand -66 : -61 GCCGCC
AC RSP01657 Mean Expected Number 0.000 -strand -165 : -176 TTTGACGTAtAC
AC RSP01660 Mean Expected Number 0.000 -strand -165 : -176 tTTGACGTATAC
AC RSP01741 Mean Expected Number 0.000 -strand -127 : -139 TTATTGACCtAAT
Totally 7 motifs of 7 different REs have been found
Description of REs found
29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775
196. Group TF: ABI5 /AC: RSP00203//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.1 /TF: ABI5
418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown
760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328
1475. Group TF: HY5 /AC: RSP01657//OS: Arabidopsis thaliana /GENE: MP/ARF5 (At1g19850)/RE: C/A-box /TF: HY5
1478. Group TF: STF1/HY5 /AC: RSP01660//OS: Arabidopsis thaliana /GENE: CKX5/6 (At1g75450)/RE: C/A-box /TF: STF1/HY5
1548. Group TF: WRKY11 /AC: RSP01741//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS3 /TF: WRKY11
Download This Page
Download Promoter Sequence in FASTA Format