> PLPR0311 ..AC:X14172.1 ..OS:Oryza sativa (indica cultivar groupp) ..GENE:OSPHY18 ..PROD:phytochrome ..[ -200: +51] ..CDS:+2753 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.16 G - 0.29 T - 0.20 C - 0.36
1 ggtaaatccg cgacacctca cctccccacg gcgaccccat ccgcgccggc
51 cggtgatcgg ggtgatgggg gaaggatggg gccggtgcgt gcgtgcgatg
101 cgacgcgagc cccggcctaa gcacagcaca gctgactagc tgagccccca
151 caccatcaca ggctaggcta tttatttatt cagctcgcca ctgccacccg
201 AGTGCGGCTG CCTTGGCTTT GTCTCGTCCC GTCTCGTCTG CCTCCTCCTC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00253 Mean Expected Number 0.005 +strand -196 : -189 AATCCGCG
AC RSP00948 Mean Expected Number 0.003 +strand -200 : -194 GGTAAAT
Totally 2 motifs of 2 different REs have been found
Description of REs found
246. Group RE: Oct (r) /AC: RSP00253//OS: Triticum aestivum /GENE: H3/RE: Oct (r) /TF: unknown ||Identical REs AC: RSP01503 RSP01504
877. Group TF: GT-2 /AC: RSP00948//OS: Oryza sativa /GENE: PHYA/RE: GT3-bx /TF: GT-2
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