> PLPR0317 ..AC:AY684928.1 ..OS:Hordeum vulgare ..GENE:Lem2 ..PROD:jacalin related lectin-like protein LEM2 ..[ -200: +51] ..CDS: +70 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.28 C - 0.23
1 tagtcggtag cggggtgtca taggcttagg attcattgaa ccaacggact
51 ctataagttt aagctattaa ttagtgacct actcactcca tgcaattaat
101 agcctatgtg actaattgat gccaactgta gcatgcagat agtatcATTG
151 Ttgggcgcaa actcgcTATA AATAggcggc catgcctgat catacgatcc
201 ATCGCAACAC ACTCTCACAC ACACATACAT TTCAGAGTTG GACTTGCAGT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP01296 Mean Expected Number 0.002 +strand -35 : -27 CTATAAATA
AC RSP01708 Mean Expected Number 0.008 +strand -35 : -26 CTATAAATAG
AC RSP01708 Mean Expected Number 0.008 -strand -26 : -35 CTATTTATAG
Totally 3 motifs of 2 different REs have been found
Description of REs found
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1516. Group TF: RIN /AC: RSP01708//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC [MEF2] /TF: RIN
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