> PLPR0319 ..AC:AY382595.1 ..OS:Craterostigma plantagineum ..GENE:CpEdi-9 ..PROD:early dehydration inducible protein ..[ -200: +51] ..CDS: +42 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.23 C - 0.29
1 cataaggacc atttttaaca atttaataac ataaagcatc tccacgttat
51 ggcagtttct agatagaccc cttacgtgtc ctaagcacaa acctccttca
101 cctcccaaac caacaagaat ctgccaccaa gtccatcgac tccatattct
151 ccacgtaact caaaacgtcT ATAAATAgca taaaagaact caacaatgct
201 CACAGATTGC AGGGAAAAAA CACACAGAGA ACTCGTTTCC TATGCAACAC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00070 Mean Expected Number 0.001 +strand -128 : -121 TACGTGTC
AC RSP00189 Mean Expected Number 0.003 +strand -51 : -42 TCCACGTAaC
AC RSP00247 Mean Expected Number 0.002 -strand -121 : -130 GaCACGTAAG
AC RSP01024 Mean Expected Number 0.008 -strand -141 : -147 AGAAACT
AC RSP01035 Mean Expected Number 0.005 +strand -127 : -121 ACGTGTC
AC RSP01261 Mean Expected Number 0.001 +strand -129 : -122 TTACGTGT
AC RSP01274 Mean Expected Number 0.005 +strand -51 : -42 TCCACGTAaC
AC RSP01275 Mean Expected Number 0.005 +strand -160 : -151 TCCACGTtAT
AC RSP01296 Mean Expected Number 0.005 +strand -32 : -24 CTATAAATA
AC RSP01708 Mean Expected Number 0.007 +strand -32 : -23 CTATAAATAG
AC RSP01708 Mean Expected Number 0.007 -strand -23 : -32 CTATTTATAG
AC SP017556 Mean Expected Number 0.006 +strand -68 : -61 CCATCGAC
Totally 12 motifs of 11 different REs have been found
Description of REs found
69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1
183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5
240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738
949. Group RE: R1 /AC: RSP01024//OS: Arabidopsis thaliana /GENE: GapB/RE: R1 /TF: unknown
960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1
1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1
1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown
1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1516. Group TF: RIN /AC: RSP01708//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC [MEF2] /TF: RIN
1561. Group TF: C1 /AC: SP017556//OS: Glycine max /GENE: a2/RE: C1BS2 /TF: C1
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