> PLPR0322 ..AC:AF182197.1 ..OS:Hordeum vulgare ..GENE:rsh1 ..PROD:RNAse S-like protein precursor ..[ -200:  +51]  ..CDS:  +85 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.31   G -  0.22   T -  0.22   C -  0.25

      1  aagcgcacag ctggtacatg cccctcaacg gccttgctaa gaaatcttat
     51  cgctaatctt aaacaaaaga gagatcttat cgtttatacg tgtggccgag
    101  aatggagcAC AATatatgca ccacagaaaa aataaaatga agggggttgg
    151  taggcatgcc caacgtccTA TAAATAccct tgccccggta gtcactcctc
    201  AGTCCTCACC AAGGCACTTC TGGGTGTCCA AATAAGCGCA CTCGTGAGAA
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00078   Mean Expected Number 0.000   -strand    -48 :  -59   CtACCAACCCCC
AC RSP00489   Mean Expected Number 0.004   -strand    -45 :  -54   TgCCTACCAA
AC RSP00651   Mean Expected Number 0.001   -strand    -46 :  -56   gCCTACCAACC
AC RSP00652   Mean Expected Number 0.002   +strand    -16 :   -9   CCGGTAGT
AC RSP01288   Mean Expected Number 0.003   +strand   -115 : -108   ATACGTGT
AC RSP01296   Mean Expected Number 0.002   +strand    -33 :  -25   CTATAAATA
AC RSP01301   Mean Expected Number 0.000   +strand    -33 :  -24   CTATAAATAC
AC RSP01454   Mean Expected Number 0.006   -strand    -50 :  -56   ACCAACC

  Totally       8 motifs of     8 different REs have been found


Description of REs found

   77. Group RE: AC-II /AC: RSP00078//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-II /TF: unknown
  465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown
  625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1
  626. Group TF: C1 /AC: RSP00652//OS: Zea mays /GENE: a1/RE: C1 DBS /TF: C1
 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC:  RSP01302
 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4