> PLPR0323 ..AC:AF285176.1 ..OS:Musa x paradisiaca ..GENE:ACT1 ..PROD:actin ..[ -200: +51] ..CDS:+1055 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.26 G - 0.19 T - 0.31 C - 0.24
1 ctcgagacag ctcattgacg aacacaaaag gcatattcga cttccgtgta
51 tagctcaagc gacaaaacac tgggtttaat ctttttattc gacattctct
101 gtgggatccg caacacgtat cctaaatccc ataagtcgag ttaatagaaa
151 gaccatttaa gctgtctcgt cgctgggtag agacacagga gctgcttgtt
201 CTTTTCCTTT TTCTCTCTGT TTATCTTTGA TCTCGCTACT GCAATGATAC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00035 Mean Expected Number 0.009 +strand -176 : -170 CAAAAGG
AC RSP01288 Mean Expected Number 0.004 -strand -81 : -88 ATACGTGT
AC RSP01640 Mean Expected Number 0.003 -strand -13 : -22 CTgTGTCTCT
AC RSP01702 Mean Expected Number 0.006 +strand -89 : -80 AACACGTATc
Totally 4 motifs of 4 different REs have been found
Description of REs found
34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family
1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown
1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown
1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown
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