> PLPR0327 ..AC:AB024081.1 ..OS:Cucumis sativus ..GENE:NPR ..PROD:NADPH-protochlorophyllide oxidoreductase ..[ -200: +51] ..CDS: +62 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.29 G - 0.09 T - 0.39 C - 0.24
1 agaagaaaaa aaatctatag gaaatccagt tctcaaattc tgattggttc
51 ctacaaattg atatggaaca agcccacact tcacaaatta tcttatcctt
101 tctgattttt ggtatcttac atccatcact cccctttctt atGCAATctc
151 ctcttgatct ttcttccTAT ATATAcactc tctagatatt cttttccaaa
201 TGCTTAACAT AATTTAAAAC CATCAATTTT TTGCTCTCTT GTTGTTCCTT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00231 Mean Expected Number 0.003 -strand -154 : -160 CCAATCA
AC RSP00888 Mean Expected Number 0.005 +strand -192 : -184 AAAAATCTA
AC RSP01509 Mean Expected Number 0.000 -strand -153 : -161 ACCAATCAG
Totally 3 motifs of 3 different REs have been found
Description of REs found
224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown
820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1
1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510
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