> PLPR0328 ..AC:AJ306592.1 ..OS:Oryza sativa (subsp. indica) ..GENE:tub-16 ..PROD:beta-tubulin 16 ..[ -200: +51] ..CDS: +290 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.25 G - 0.24 T - 0.35 C - 0.17
1 taagatactt gtggactttt gattttgggg gatttcaact gggatatgta
51 taagctattc ctgcagttct gcttcactat gaggcatttc gagtgtattt
101 agcttttagc ctataaatcc gatgccagaa taccgatcca tttttaggtg
151 gtctggtgtg tatgatgatg catttagatg gaccatcggt gattgaactg
201 TGAAGACACT AGGTTTTAGC CATTTTAGCA TACGAAACTC CAGATCTGGC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00642 Mean Expected Number 0.009 -strand -25 : -32 TAAATGCA
AC RSP01301 Mean Expected Number 0.009 +strand -90 : -81 CTATAAATcC
Totally 2 motifs of 2 different REs have been found
Description of REs found
617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown
1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302
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