> PLPR0333 ..AC:X69794.1 ..OS:Nicotiana tabacum ..GENE:PR-2d ..PROD:acidic beta-1,3-glucanase ..[ -200: +51] ..CDS: +53 ..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.25 G - 0.16 T - 0.39 C - 0.20
1 cttcactggg cttgacttgg ttattaactc tacttaatac actgtctata
51 ttccatgacg tgcttcactg ggtatgactt ggttaataaa attacactat
101 ttctttaact gcttcacagg GCAATggact ttggcttttt aagtctttgt
151 aggtcttctt ctacttgtcT ATATAAGaag cagcctaatg gttcctgaaa
201 CGCACAATTT CAGCTCAAGT GTATCTAATT ATTCTCTCAT TTCCATTTTA
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00039 Mean Expected Number 0.009 -strand +12 : +2 TGAAATTGTGc
AC RSP00068 Mean Expected Number 0.010 -strand -32 : -41 GACAaGTAGA
AC RSP00399 Mean Expected Number 0.002 -strand -138 : -145 GCACGTCA
AC RSP00727 Mean Expected Number 0.010 +strand -191 : -185 GCTTGAC
Totally 4 motifs of 4 different REs have been found
Description of REs found
38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs
67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown
381. Group TF: AP1-like leucine zipper TF /AC: RSP00399//OS: Nicotiana tabacum /GENE: RNP2/RE: ATF /TF: AP1-like leucine zipper TF ||Identical REs AC: RSP00884
690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown
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