> PLPR0335 ..AC:X00806 ..OS:Pisum sativum ..GENE: rbcS ..PROD:small subunit of ribulose-1,5-bisphosphate carboxylase ..[ -200:  +51]  ..CDS:  +36 |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.38   G -  0.15   T -  0.29   C -  0.18

      1  tatcctattg gtggctaatg ataaggttag cacacaaaac tttcaatctt
     51  gtgtggttaa tatgactgca aagtttatca ttttcacaat ccaacaaact
    101  ggttctaggc agtggccaac taccACAATt ttaagaccat aatattggaa
    151  atagaaaaat caatacatTA TATAAAgcaa gttttagtac aagctttgca
    201  ATTCAACCAC AAGAACTAAG AAAGTCAGAA AAAATGGCTT CTATGATATC
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00205   Mean Expected Number 0.000   +strand   -150 : -137   GTGTGGTTAATATG
AC RSP00228   Mean Expected Number 0.002   +strand   -124 : -113   ATCATTTTCACa
AC RSP00627   Mean Expected Number 0.002   +strand   -183 : -175   ATGATAAGG
AC RSP00941   Mean Expected Number 0.008   +strand   -160 : -153   TTTCAATC
AC RSP00942   Mean Expected Number 0.000   +strand   -150 : -136   GTGTGGTTAATATGa
AC RSP00998   Mean Expected Number 0.000   +strand   -131 : -118   AAAgTTTATCATTT
AC RSP01046   Mean Expected Number 0.001   +strand   -114 : -106   CAATCCAAC
AC RSP01333   Mean Expected Number 0.000   +strand   -151 : -137   TGTGTGGTTAATATG
AC RSP01361   Mean Expected Number 0.000   +strand   -192 : -173   TGGTGGCTA-- +0 bp --ATGATAAGGTT
AC RSP01437   Mean Expected Number 0.002   -strand   -192 : -200   AATAGGATA
AC RSP01594   Mean Expected Number 0.008   -strand   -153 : -160   GATTGAAA

  Totally      11 motifs of    11 different REs have been found


Description of REs found

  198. Group TF: GT-1 /AC: RSP00205//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX II /TF: GT-1
  221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1
  603. Group TF: GAF-1 /AC: RSP00627//OS: Pisum sativum /GENE: rbcS-3A/RE: GA-1 SITE /TF: GAF-1
  870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF
  871. Group TF: GBF /AC: RSP00942//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II /TF: GBF ||Identical REs AC:  RSP01595
  919. Group TF: 3AF5 /AC: RSP00998//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 5'-III element /TF: 3AF5
  970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown
 1218. Group TF: BGTF /AC: RSP01333//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: BGTF BS (Box II, wild) /TF: BGTF
 1284. Group RE: rbcS-CMA4 [TGG-motif - I-box] /AC: RSP01361//OS: Pisum sativum /GENE: rbcS 8.0/RE: rbcS-CMA4 [TGG-motif - I-box] /TF: unknown
 1310. Group RE: GATA /Group TF: R-GATA /AC: RSP01437//OS: Oryza sativa /GENE: RSs1/RE: GATA /TF: R-GATA
 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown