> PLPR0340 ..AC:L19262.1 ..OS:Arabidopsis thaliana ..GENE:HMG2 ..PROD:3-hydroxy-3-methylglutaryl-CoA reductase ..[ -200: +51] ..CDS: +194 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.41 G - 0.13 T - 0.27 C - 0.18
1 taattttcag aataactatt aaaaagtgaa taattcttca ctgatccatg
51 ttggactagt aagtagtaac aatcaaatcc ataacattaa atgtgttgaa
101 aaaaagaatc aaaagtaaca aaaaccataa ccctaaataa tcatcccaaa
151 agtggaaata ataaaagaag cagttagatt gtgacggagg agacaaaatc
201 ATCATCTCTG TTCTTCTTCT TCTCCTCTCT CACATACGAT GATGACCCAA
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00131 Mean Expected Number 0.009 -strand -104 : -110 AACACAT
AC RSP00270 Mean Expected Number 0.004 -strand -45 : -55 TcCACTTTTGG
AC RSP00314 Mean Expected Number 0.001 -strand -146 : -156 TCCAACaTGGA
AC RSP00999 Mean Expected Number 0.003 -strand -17 : -27 TCACaATCTAA
Totally 4 motifs of 4 different REs have been found
Description of REs found
129. Group RE: CACA box /AC: RSP00131//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CACA box /TF: unknown
262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1
300. Group TF: RSG /AC: RSP00314//OS: Arabidopsis thaliana /GENE: GA3/RE: rbe /TF: RSG
920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3
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