> PLPR0343 ..AC:S71525.1 ..OS:Glycine max ..GENE:tubB1 ..PROD:beta-tubulin ..[ -200: +51] ..CDS: +79 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.29 C - 0.24
1 tagtattgac agatgggata tcaagtggta ggaagaactg ataattcaga
51 tacataaggc cacaaggcca tgagaacaat catgcaactt cttgtcactt
101 tccacgtcca gctcattaca ctacttggag taagacatag ccccttccca
151 tcaaacccac atgaacctat taattgaact tctattcatt tttattttcc
201 ACTTGACACA AAGAAAGGCA AGTACCATTT TTCTCAACCT TATCACCCTT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00522 Mean Expected Number 0.005 -strand -173 : -179 CCACTTG
AC RSP00683 Mean Expected Number 0.005 -strand +7 : -3 GtCAAGTGGA
AC RSP01641 Mean Expected Number 0.005 +strand -111 : -102 TCTTGTCaCT
Totally 3 motifs of 3 different REs have been found
Description of REs found
498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2
652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3
1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown
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