> PLPR0344 ..AC:S71525.1 M21296.1 ..OS:Glycine max ..GENE:tubB1 ..PROD:beta-tubulin ..[ -200: +51] ..CDS: +38 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.28 G - 0.10 T - 0.33 C - 0.28
1 tcttgtcact ttccacgtcc agctcattac actacttgga gtaagacata
51 gccccttccc atcaaaccca catgaaccta ttaattgaac ttctattcat
101 ttttattttc cacttgacac aaagaaaggc aagtaccatt tttctcaacc
151 ttatcaccct tttgcataaa agggccaccc cttcttcttc ttcccttctc
201 AACTTGTACT ACAATTTCTG GATTGAATTA TCTTCAAAAT GAGAGAAATC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00171 Mean Expected Number 0.006 +strand +41 : +46 GAGAGA
AC RSP00683 Mean Expected Number 0.006 -strand -83 : -92 GtCAAGTGGA
AC RSP00961 Mean Expected Number 0.007 -strand -35 : -42 TGCAAAAG
AC RSP01039 Mean Expected Number 0.006 +strand -77 : -72 GAAAGG
Totally 4 motifs of 4 different REs have been found
Description of REs found
165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown
652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3
886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF
963. Group RE: Dof BS1 /Group TF: Dof family /AC: RSP01039//OS: Petroselinum crispum /GENE: Icy/RE: Dof BS1 /TF: Dof family
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