> PLPR0345 ..AC:J05570.1 ..OS:Arabidopsis thaliana ..GENE:AHA2 ..PROD:H+-ATPase ..[ -200: +51] ..CDS: +133 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.25 C - 0.20
1 gattcgggtt cataagccaa aaatattaca ttaatcaacg gtcaaagggt
51 gattaagaac ttaaagaggc agcaaaataa ataaaaaggg taataaatat
101 agagagacta cttggtaatg ggacccacat agccaaaacg gcggagaaaa
151 tcgtcgtttt agtggctTAT AAAAAgagga ctcgtatcga ctctgcaaca
201 GAACCACCTA ATCTCTCCTC CTCTCCTTCT CTCTATTTTG CCGGAATACA
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00635 Mean Expected Number 0.002 -strand -76 : -83 GGTCCCAT
AC RSP00847 Mean Expected Number 0.004 +strand +4 : +13 CCACCTaATC
AC RSP00935 Mean Expected Number 0.000 +strand +20 : +33 CCTCTCCTTCtCTC
AC RSP01205 Mean Expected Number 0.009 -strand -132 : -141 CCTCTTTAAG
Totally 4 motifs of 4 different REs have been found
Description of REs found
611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown
789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown
864. Group RE: CT element /AC: RSP00935//OS: Pinus sylvestris /GENE: GS1a/RE: CT element /TF: unknown
1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs
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