> PLPR0345 ..AC:J05570.1 ..OS:Arabidopsis thaliana ..GENE:AHA2 ..PROD:H+-ATPase ..[ -200:  +51]  ..CDS: +133 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.36   G -  0.19   T -  0.25   C -  0.20

      1  gattcgggtt cataagccaa aaatattaca ttaatcaacg gtcaaagggt
     51  gattaagaac ttaaagaggc agcaaaataa ataaaaaggg taataaatat
    101  agagagacta cttggtaatg ggacccacat agccaaaacg gcggagaaaa
    151  tcgtcgtttt agtggctTAT AAAAAgagga ctcgtatcga ctctgcaaca
    201  GAACCACCTA ATCTCTCCTC CTCTCCTTCT CTCTATTTTG CCGGAATACA
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00635   Mean Expected Number 0.002   -strand    -76 :  -83   GGTCCCAT
AC RSP00847   Mean Expected Number 0.004   +strand     +4 :  +13   CCACCTaATC
AC RSP00935   Mean Expected Number 0.000   +strand    +20 :  +33   CCTCTCCTTCtCTC
AC RSP01205   Mean Expected Number 0.009   -strand   -132 : -141   CCTCTTTAAG

  Totally       4 motifs of     4 different REs have been found


Description of REs found

  611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown
  789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown
  864. Group RE: CT element /AC: RSP00935//OS: Pinus sylvestris /GENE: GS1a/RE: CT element /TF: unknown
 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs

Download This Page
Download Promoter Sequence in FASTA Format