> PLPR0346 ..AC:X60115.1 ..ACOS:Arabidopsis thaliana ..GENE:AHA3 ..PROD:H+-ATPase ..[ -200: +51] ..CDS: +198 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.27 C - 0.18
1 caaagtgatg atattaaatc tttcctcctt gacaagacga taatacttca
51 attaacaaaa aaaaaaaaaa aaagagatga taatttttcc agaataaaat
101 attttcgact tggactggga ataaaaaaaa tggggtgacc taaaccgacg
151 tcgcatagtt acgagaggca TATAAATAga gagccaccaa atagcctaac
201 GTAGTCCACC TTCACTTGCT CTCTTTTTTC CGAAGAATCT GGTTCGTTTC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00354 Mean Expected Number 0.005 +strand -4 : +4 TAACGTAG
AC RSP00445 Mean Expected Number 0.003 +strand -133 : -124 AAAAAAGAGA
AC RSP00445 Mean Expected Number 0.005 -strand +29 : +20 AAAAAAGAGA
AC RSP01678 Mean Expected Number 0.008 +strand -109 : -98 gAATAAAATATT
Totally 4 motifs of 3 different REs have been found
Description of REs found
339. Group RE: GARE1 /AC: RSP00354//OS: Oryza sativa /GENE: Rep-1/RE: GARE1 /TF: unknown
425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1
1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs
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