> PLPR0347 ..AC:X62395.1 ..OS:Nicotiana tabacum ..GENE:ltp1 ..PROD:lipid transferase ..[ -200: +51] ..CDS: +107 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.37 G - 0.08 T - 0.31 C - 0.23
1 aaattgaaat cgagagagta tgtcaataaa tataaatcat ataaaataat
51 cagactaata tgtcaaattt cttccctcaa cacgagctga tacattaccc
101 taatttcaaa gcATTGAata gaacccaact atcagataat taattctctc
151 aatcaaatcc aattttctcc cTATAAAAAc cctaaggtcc tatagtgttc
201 TATATCCAAC ACTAGCTCCT ACTCCCTAAA GCATTTATTA TATCTTCCCC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00171 Mean Expected Number 0.008 +strand -189 : -184 GAGAGA
AC RSP00279 Mean Expected Number 0.007 -strand -16 : -24 TTAGGGTTT
AC RSP00369 Mean Expected Number 0.007 +strand -24 : -16 AAACCCTAA
AC RSP00572 Mean Expected Number 0.007 +strand -143 : -136 ATATGTCA
AC RSP01600 Mean Expected Number 0.007 +strand -97 : -90 TTTCAAAG
Totally 5 motifs of 5 different REs have been found
Description of REs found
165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown
270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448
354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown
548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown
1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown
Download This Page
Download Promoter Sequence in FASTA Format