> PLPR0350 ..AC:U83904.1 ..OS:Hordeum vulgare ..GENE:LOX1 ..PROD:lipoxygenase isoenzyme 1 ..[ -200:  +51]  ..CDS:  +68 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.26   G -  0.27   T -  0.13   C -  0.33

      1  accggagcgc gccatgcgaa gcacgaggag ggcacgtcac cgtccgcgcg
     51  cagcacgtgg agagcacgtc gccgtccgat ccatctctcc aaagccgagc
    101  gccacaccac cggacccgga ccggcctata aATTGCccgg accgagctgc
    151  aagcagctcc tcacacacac tcacgcaaca cacatccatc ttcactgaaa
    201  AGTGAAAAAC AGTGTGCTGG TGCCATTGGT TGGAGCAGTG AAAGCGAGGA
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00316   Mean Expected Number 0.006   -strand    +31 :  +26   AACCAA
AC RSP00399   Mean Expected Number 0.006   +strand   -169 : -162   GCACGTCA
AC RSP00695   Mean Expected Number 0.003   +strand    -74 :  -68   TATAAAT
AC RSP00817   Mean Expected Number 0.003   -strand   -140 : -149   TcCACGTGCT
AC RSP01280   Mean Expected Number 0.004   -strand   -160 : -170   GGTGACGTGcC
AC RSP01497   Mean Expected Number 0.008   +strand   -130 : -121   GCCGTCcGAT
AC RSP01505   Mean Expected Number 0.001   -strand   -120 : -128   GATCGGACG
AC RSP01601   Mean Expected Number 0.003   -strand     +7 :   -1   TTTCACTT
AC RSP01654   Mean Expected Number 0.008   -strand   -160 : -169   GGTGACGTGC

  Totally       9 motifs of     9 different REs have been found


Description of REs found

  302. Group RE: REalpha /AC: RSP00316//OS: Lemna gibba /GENE: Lhcb2*1/RE: REalpha /TF: unknown
  381. Group TF: AP1-like leucine zipper TF /AC: RSP00399//OS: Nicotiana tabacum /GENE: RNP2/RE: ATF /TF: AP1-like leucine zipper TF ||Identical REs AC:  RSP00884
  661. Group RE: TATA box /AC: RSP00695//OS: Oryza sativa /GENE: Gt1/RE: TATA box /TF: unknown
  763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF
 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5
 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC:  RSP01498
 1362. Group RE: NonaLS /AC: RSP01505//OS: Triticum aestivum /GENE: H1 (TH315)/RE: NonaLS /TF: unknown ||Identical REs AC:  RSP01506
 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown
 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5