> PLPR0351 ..AC:AB008795.1 ..OS:Oryza sativa (indica cultivar-group) ..GENE:waxy ..PROD:waxy protein ..[ -200: +51] ..CDS:+1308 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.20 G - 0.27 T - 0.23 C - 0.29
1 aaagtcggtt ttgcttttgg ttttttggtt ctgaggcact gacgtgcggg
51 ccagcgtacg cctgcgtgcc ccgcatgtca tcgtcgacac cggccgggga
101 ccgggtaaaa tgtgttgcgg gagggagagg gggagagaga tcgcgcgggc
151 ttcacgcaac ggcgcTACAA ATAgccaccc acaccaccac cccctctctc
201 ACCATTCCTT CAGTTCTTTG TCTATCTCAA GACACAAATA ACTGCAGTCT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00399 Mean Expected Number 0.005 -strand -154 : -161 GCACGTCA
AC RSP00865 Mean Expected Number 0.001 +strand -69 : -61 GGAGAGAGA
AC RSP00913 Mean Expected Number 0.004 -strand -119 : -128 GATGACATGC
Totally 3 motifs of 3 different REs have been found
Description of REs found
381. Group TF: AP1-like leucine zipper TF /AC: RSP00399//OS: Nicotiana tabacum /GENE: RNP2/RE: ATF /TF: AP1-like leucine zipper TF ||Identical REs AC: RSP00884
801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1
844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2
Download This Page
Download Promoter Sequence in FASTA Format