> PLPR0354 ..AC:X05351.1 ..OS:Petroselinum crispum ..GENE:Pc4CL2 ..PROD:4-coumarate CoA ligase ..[ -200:  +51]  ..CDS:  +78 ..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.31   G -  0.04   T -  0.30   C -  0.35

      1  ccatcacatg ctgcttcatc ttagtcaact ttttctcttc atcacctaac
     51  acacaatatt tttctcacca accccactca taatttaatt ccccatttta
    101  cccctaacca aacctcatat tccgataaac tcccccttta ccaaccccca
    151  tccccttacc aaacccacca catttatatg ttgaattgtt catcatctaa
    201  CATGTAAGAA AACTCTCTTA CTCATCATCG TTTCAACACC AAAAACACAC
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00459   Mean Expected Number 0.005   -strand   -173 : -182   TTGACTAaGA
AC RSP00949   Mean Expected Number 0.003   +strand   -179 : -172   TAGTCAAC
AC RSP00950   Mean Expected Number 0.001   +strand   -137 : -127   CTCACCAACCC
AC RSP01037   Mean Expected Number 0.000   +strand   -111 :  -96   TCCCCATTTTACCCCT
AC RSP01038   Mean Expected Number 0.000   +strand    -80 :  -58   TCCGATAAACTCCCCCTTTACCA
AC RSP01043   Mean Expected Number 0.003   +strand   -138 : -126   TCTCACCAACCCC
AC RSP01044   Mean Expected Number 0.002   +strand   -138 : -127   TCTCACCAACCc
AC RSP01083   Mean Expected Number 0.009   +strand   -138 : -127   TCTCACCAACCC
AC RSP01389   Mean Expected Number 0.000   +strand   -103 :  -53   TTACCCCTAACCAAACCTCATATTCCGATAAACTCCCCCTTTACCAACCCC
AC RSP01391   Mean Expected Number 0.000   +strand   -162 : -125   TCATCACCTAACAC-- ** bp --TCTCACCAACCCCA

  Totally      10 motifs of    10 different REs have been found


Description of REs found

  437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2
  878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown
  879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown
  961. Group RE: FP56 /AC: RSP01037//OS: Petroselinum crispum /GENE: 4CL1/RE: FP56 /TF: unknown
  962. Group RE: FP7 /AC: RSP01038//OS: Petroselinum crispum /GENE: 4CL1/RE: FP7 /TF: unknown
  967. Group RE: FP2 /AC: RSP01043//OS: Solanum tuberosum /GENE: St4cl-1/RE: FP2 /TF: unknown
  968. Group RE: box L /AC: RSP01044//OS: Petroselinum crispum /GENE: CCoAOMT/RE: box L /TF: unknown
 1001. Group TF: DcMYB1 /AC: RSP01083//OS: Daucus carota /GENE: DcPAL1/RE: box-L5 /TF: DcMYB1
 1273. Group RE: 4cl-CMA1 /AC: RSP01389//OS: Petroselinum crispum /GENE: 4CL-1/RE: 4cl-CMA1 /TF: unknown
 1275. Group RE: 4cl-CMA2 /AC: RSP01391//OS: Petroselinum crispum /GENE: 4CL-1/RE: 4cl-CMA2 /TF: unknown