> PLPR0355 ..AC:X64257.1 ..OS:Brassica napus ..GENE:Bp10 ..PROD:protein homologous to ascorbate oxidase ..[ -200: +51] ..CDS: +64 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.50 G - 0.15 T - 0.18 C - 0.18
1 agacatggaa accaaagcca aaaattagaa aagggagaaa aatgttaaga
51 gaaactaaaa acactaataa tagcgagagg ttaaacttca atgttcccaa
101 atatggaaat gaatagcgaa atgagaggag atgccaaaga aaatcagaaa
151 aagcagtctt aaaaaacccT ATAAAAAcgt cctcaagcat tttcacaact
201 CGAAATTCAA ACCCCGAAAC ATAACCAAAT AAAAATAAAA CATTAATACC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00080 Mean Expected Number 0.003 +strand -107 : -92 TTcCCAAATATGGAAA
AC RSP00080 Mean Expected Number 0.003 -strand -92 : -107 TTTCCATATTTGGgAA
AC RSP00085 Mean Expected Number 0.003 +strand -107 : -92 TTcCCAAATATGGAAA
AC RSP00085 Mean Expected Number 0.003 -strand -92 : -107 TTTCCATATTTGGgAA
AC RSP00331 Mean Expected Number 0.004 -strand -189 : -197 GTTTCCATG
Totally 5 motifs of 3 different REs have been found
Description of REs found
79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF
83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3
317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F
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