> PLPR0356 ..AC:X63339.1 ..OS:Sesbania rostrata ..GENE:Enod2 ..PROD:nodulin ..[ -200: +51] ..CDS: +23 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.34 C - 0.21
1 aagtattagc ttttgggatt gagttaatta ggagtagtca tccaaaatct
51 attaccttcc cttcacactc agattattta atattgagtg ttcgaaatat
101 ctttttccta ataaaataac aaaagATTGA tgagtttgac agaaaaattt
151 gccatgcccc ccacccTATA AATActggct ccttgttttc attttcgtcc
201 ATCCATCACA AACATAGATA GAAATGTCCT CTCTACACTA CTCACTAGTG
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00350 Mean Expected Number 0.001 +strand -5 : +6 CGTCCATcCAT
AC RSP00859 Mean Expected Number 0.002 +strand -28 : -19 tACTGGCTCC
AC RSP01000 Mean Expected Number 0.005 +strand -47 : -38 ATGCCCCcCA
AC RSP01296 Mean Expected Number 0.007 +strand -35 : -27 CTATAAATA
AC RSP01301 Mean Expected Number 0.001 +strand -35 : -26 CTATAAATAC
Totally 5 motifs of 5 different REs have been found
Description of REs found
335. Group RE: VP1 RE /AC: RSP00350//OS: Zea mays /GENE: C1/RE: VP1 RE /TF: unknown
795. Group RE: GACTGGCTCC motif /AC: RSP00859//OS: Zea mays /GENE: H4C7/RE: GACTGGCTCC motif /TF: unknown
921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302
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