> PLPR0358 ..AC:NM_127738.2 ..OS:Arabidopsis thaliana ..GENE:Atgrp7 (F2G1.4; GRP7) ..PROD:glycine-rich RNA-binding protein ..[ -200: +51] ..CDS: +58 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.31 G - 0.11 T - 0.30 C - 0.27
1 gcatcgtcgt ctttccattt gcgcattaaa ccaaaaagtg tcacgtgata
51 tgtccccaac cactacgaat tttaactaca gatttaacca tggttaaacc
101 agaattcacg taaaccgact ctaaacctag aaaatatcta aaccttggtt
151 aatatctcag ccccctTATA AATAacgaga cttcgtctac atcgttctac
201 ACATCTCACT GCTCACTACT CTCACTGTAA TCCCTTAGAT CTTCTTTTCA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00892 Mean Expected Number 0.005 +strand -52 : -44 TTAATATCT
AC RSP00947 Mean Expected Number 0.008 +strand -54 : -48 GGTTAAT
AC RSP00966 Mean Expected Number 0.001 +strand -161 : -152 GtCACGTGAT
AC RSP01013 Mean Expected Number 0.009 -strand -180 : -189 CAAATGGAaA
AC RSP01435 Mean Expected Number 0.001 +strand -148 : -139 TCCCCAACCA
AC RSP01699 Mean Expected Number 0.007 +strand -158 : -152 ACGTGAT
Totally 6 motifs of 6 different REs have been found
Description of REs found
824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family
876. Group TF: GT-2 /AC: RSP00947//OS: Oryza sativa /GENE: PHYA/RE: GT1-bx /TF: GT-2
889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF
938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF
1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2
1510. Group RE: CARE B1 /AC: RSP01699//OS: Arabidopsis thaliana /GENE: At2g21640/UPOX/RE: CARE B1 /TF: unknown
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