> PLPR0360 ..AC:AB097087.1 ..OS:Glycine max ..GENE:GmPEPC15 ..PROD:phosphoenolpyruvate carboxylase ..[ -200: +51] ..CDS: +431 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.30 C - 0.20
1 gagatcagaa aatgtactat acactatacc aactgcactt aaggagagag
51 tcttgggaaa ttaaaagcat attccatcat gtgcagtaat taattaggtt
101 cgaccaaaAC AATacaaggt aacaaaaaaa gaaaatttta ggcaagtaaa
151 aatgtctcta cttttcTATA TAAAgacacc cttatgcaca ctttaagatc
201 ACAACACCAT CTCTCTCTTT TTGATCCATT TTTCATTCGT TGTGATCTTC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00864 Mean Expected Number 0.001 -strand +18 : +10 AGAGAGAGA
AC RSP00985 Mean Expected Number 0.005 +strand -109 : -100 AaTTAGGTTC
AC RSP01642 Mean Expected Number 0.006 +strand -51 : -42 AAATGTCTCt
Totally 3 motifs of 3 different REs have been found
Description of REs found
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305)
1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown
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