> PLPR0361 ..AC: Y09417 ..OS:Catharanthus roseus ..GENE:cpr ..PROD:NADPH:cytochrome P-450 reductase ..[ -200: +51] ..CDS: +284 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.33 C - 0.24
1 taattagcaa aagcaaattt tctaaaaaaa aaaaattcca tttattggta
51 cattaccacg aggccccagt gccttaaaag tctttaacca tggttaattg
101 gtgttaggtg ggtttgacta gtctggtttg gtaggcgttc ttccttctct
151 ctgcttctct ctctccccaT ATAAATCacc ttcattcatc tttcttcatt
201 CAGATTTCAT TCAGTCTTTC CAAACCAAAC CTAACACCAA GAACACGAGA
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00079 Mean Expected Number 0.000 -strand -89 : -98 CCCACCTAaC
AC RSP00153 Mean Expected Number 0.002 +strand -145 : -136 CCACGaGGCC
AC RSP00597 Mean Expected Number 0.001 +strand -108 : -97 GTTAATTgGTGT
AC RSP00653 Mean Expected Number 0.007 +strand -56 : -46 TTCTCTCTgCT
AC RSP00864 Mean Expected Number 0.003 -strand -37 : -45 AGAGAGAGA
AC RSP00865 Mean Expected Number 0.002 -strand -35 : -43 GGAGAGAGA
AC RSP01008 Mean Expected Number 0.008 -strand -92 : -98 ACCTAAC
Totally 7 motifs of 7 different REs have been found
Description of REs found
78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420
149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154
573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown
627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1
933. Group TF: PtMYB1; PtMYB4 /AC: RSP01008//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 3 (AC-III) /TF: PtMYB1; PtMYB4 ||Identical REs AC: RSP01455
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