> PLPR0363 ..AC:AF129073.1 ..OS:Prunus persica ..GENE:ACO1 ..PROD:1-aminocyclopropane-1-carboxylate oxidase ..[ -200: +51] ..CDS: +83 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.31 C - 0.27
1 gtgggccacc ctacaaagcc tctggtgata tttttggaat tttttaccca
51 aaaatttccc tagcctgaaa acctgtcctt catccaccct accagtaatt
101 tgcttgcttt ctaccattta ttttatttat ttttattctt gtcaaagtcc
151 acaggtacac tttaaactcc TATAAATAcc acccccacac caaactccac
201 TTCACCAGGA CCAAAATTAC CAACACTTTG TTGAGAGAGG AGAGGAGAGA
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00140 Mean Expected Number 0.001 +strand -76 : -64 AtTTATTTTTATT
AC RSP00441 Mean Expected Number 0.001 -strand +32 : +23 AACAAAGTGT
AC RSP00509 Mean Expected Number 0.001 +strand -30 : -19 TATAAATACCAc
AC RSP01296 Mean Expected Number 0.004 +strand -31 : -23 CTATAAATA
AC RSP01301 Mean Expected Number 0.001 +strand -31 : -22 CTATAAATAC
Totally 5 motifs of 5 different REs have been found
Description of REs found
136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1
421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1
485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302
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