> PLPR0368 ..AC:Y12859.1 ..OS:Lotus japonicus ..GENE:gln1 ..PROD:glutamine synthetase ..[ -200: +51] ..CDS: +213 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.33 G - 0.09 T - 0.34 C - 0.24
1 ccagaatctc caactgatta ctcttataac tgtcagatta caactcctaa
51 aaaccccaaa actaattaca cctcatgtta tcattacaat ttttttttta
101 cccattttca gaatctcgag cggattaatc tcacggtatc aaaattagag
151 attcctttag gaaatTAAAA AAAatatcac aaatcatttt aatcattctc
201 ATCAGGATTT CTCTCTCTCT CTCTCTTGTT GTCATCTGTA AAAAGACCCC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00114 Mean Expected Number 0.005 +strand +25 : +34 CTTGTtGTCA
AC RSP00864 Mean Expected Number 0.004 -strand +26 : +18 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.004 -strand +24 : +16 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.004 -strand +22 : +14 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.004 -strand +20 : +12 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.004 -strand +18 : +10 AGAGAGAGA
AC RSP01068 Mean Expected Number 0.008 -strand -164 : -172 TCTGACAGT
AC RSP01283 Mean Expected Number 0.000 -strand +25 : +9 GAGAGAGAGAGAGAGAA
Totally 8 motifs of 4 different REs have been found
Description of REs found
112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21
1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown
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