> PLPR0368 ..AC:Y12859.1 ..OS:Lotus japonicus ..GENE:gln1 ..PROD:glutamine synthetase ..[ -200:  +51]  ..CDS: +213 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.33   G -  0.09   T -  0.34   C -  0.24

      1  ccagaatctc caactgatta ctcttataac tgtcagatta caactcctaa
     51  aaaccccaaa actaattaca cctcatgtta tcattacaat ttttttttta
    101  cccattttca gaatctcgag cggattaatc tcacggtatc aaaattagag
    151  attcctttag gaaatTAAAA AAAatatcac aaatcatttt aatcattctc
    201  ATCAGGATTT CTCTCTCTCT CTCTCTTGTT GTCATCTGTA AAAAGACCCC
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00114   Mean Expected Number 0.005   +strand    +25 :  +34   CTTGTtGTCA
AC RSP00864   Mean Expected Number 0.004   -strand    +26 :  +18   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.004   -strand    +24 :  +16   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.004   -strand    +22 :  +14   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.004   -strand    +20 :  +12   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.004   -strand    +18 :  +10   AGAGAGAGA
AC RSP01068   Mean Expected Number 0.008   -strand   -164 : -172   TCTGACAGT
AC RSP01283   Mean Expected Number 0.000   -strand    +25 :   +9   GAGAGAGAGAGAGAGAA

  Totally       8 motifs of     4 different REs have been found


Description of REs found

  112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown
  800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
  987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21
 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown

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