> PLPR0369 ..AC:Y12859.1 ..OS:Lotus japonicus ..GENE:gln1 ..PROD:glutamine synthetase ..[ -200:  +51]  ..CDS:  +80 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.35   G -  0.15   T -  0.28   C -  0.21

      1  cggtatcaaa attagagatt cctttaggaa attaaaaaaa atatcacaaa
     51  tcattttaat cattctcatc aggatttctc tctctctctc tcttgttgtc
    101  atctgtaaaa agaccccacc aaccattttC CAATtagaat ccactcaatc
    151  cagctaggcg aagccacTAT AAAAGcttta ccggagttca cgttttcctc
    201  AATATATTGA ATCTGACGAG GATTCGAAGA GAAAGAGAGA GAAAGAAGAA
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00055   Mean Expected Number 0.003   -strand   -135 : -146   AGAATgATTAAA
AC RSP00079   Mean Expected Number 0.005   +strand    -86 :  -77   CCCACCaACC
AC RSP00114   Mean Expected Number 0.004   +strand   -109 : -100   CTTGTtGTCA
AC RSP00601   Mean Expected Number 0.001   +strand    -87 :  -79   CCCCACCAA
AC RSP00653   Mean Expected Number 0.002   -strand    +43 :  +33   TTCTCTCTCtT
AC RSP00861   Mean Expected Number 0.002   +strand    +30 :  +38   AGAAAGAGA
AC RSP00864   Mean Expected Number 0.001   +strand    +34 :  +42   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.001   -strand   -108 : -116   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.001   -strand   -110 : -118   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.001   -strand   -112 : -120   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.001   -strand   -114 : -122   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.001   -strand   -116 : -124   AGAGAGAGA
AC RSP01283   Mean Expected Number 0.000   -strand   -109 : -125   GAGAGAGAGAGAGAGAA

  Totally      13 motifs of     8 different REs have been found


Description of REs found

   54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC:  RSP00645
   78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC:  RSP00420
  112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown
  577. Group RE: C-rich R /AC: RSP00601//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich R /TF: unknown
  627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
  797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1
  800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown