> PLPR0371 ..AC:AF121139.2 ..OS:Oryza sativa L. subsp. indica ..GENE:RIM2 ..PROD:RIM2 protein ..[ -200: +51] ..CDS: +149 ..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.29 G - 0.27 T - 0.24 C - 0.20
1 cgagcagggc cacaaaaagt tggataccac tctggagttc ctgcaatgga
51 aggcaaaaaa tggtgttagt gacaaggcat ttggcgattt attgaaactc
101 gtcaagaaca ttcttccgga gggaaacaaA TTGCccgtga caacgtacga
151 ggctaaggag atagtcctgc cctctaggac tgaagttcag agattcacgc
201 ATGTCCTGTT TGATTGTATC CTATATCGCG GTGAGGGGTA CGAGAACCTA
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP01091 Mean Expected Number 0.002 -strand +19 : +9 ATAcAATCAAA
AC RSP01209 Mean Expected Number 0.007 -strand -182 : -191 CTTTTTGTGG
AC RSP01470 Mean Expected Number 0.006 +strand -6 : +4 TCAcGCATGT
Totally 3 motifs of 3 different REs have been found
Description of REs found
1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown
1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs
1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2)
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