> PLPR0372 ..AC:AB008892.1 ..OS:Nicotiana tabacum ..GENE:chn134 ..PROD:chitinase 134 ..AC [-348:+50] ..AC ..CDS: +18 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.32 C - 0.22
1 caaattgacc agaataacgt gtgatttgac gacgatcata cacatgtcat
51 acttcccctg ctcccactga gaataaatta tgaaatcatc catcccaagg
101 tttgatttct ttttactgaa aactcgatcg aaaattctac accccacttc
151 actttattac tcacTATATA TAcaactcta ttatcacctt aacgaaaacc
201 AAGACAAATA AAACAGAATG ATGAGGTTTT GGTTAGTGTC TTTGTTTTGT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00115 Mean Expected Number 0.008 -strand -89 : -99 AaAGAAATCAA
AC RSP00259 Mean Expected Number 0.005 +strand +30 : +36 TGGTTAG
AC RSP00460 Mean Expected Number 0.005 +strand -160 : -151 cACATGTCAT
AC RSP00467 Mean Expected Number 0.003 -strand -190 : -199 TGGTCAATTt
AC RSP00574 Mean Expected Number 0.009 +strand -191 : -184 CAGAATAA
AC RSP01103 Mean Expected Number 0.002 -strand +29 : +22 AAACCTCA
AC RSP01469 Mean Expected Number 0.008 -strand -152 : -161 TgACATGTGT
Totally 7 motifs of 7 different REs have been found
Description of REs found
113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1
252. Group TF: ATMyb2 /AC: RSP00259//OS: Arabidopsis thaliana /GENE: rd22/RE: ATMyb2 BS /TF: ATMyb2
438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2
445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown
550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown
1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown
1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2)
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