> PLPR0374 ..AC:AY684304.1 AF530460.1 ..OS:Striga hermonthica ..GENE:ShAS ..PROD:asparagine synthetase ..[ -200: +51] ..CDS: +247 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.26 C - 0.27
1 gcccagattc tccgtccttt gcatacgaat ataattaaat aaatagtaat
51 taaaataggc cctttcacta ttcaagttca gcagccattt ttgagcgttt
101 ggcttttgta gagcaactct ctctccctct ctctctgtct ctcattcggt
151 catcggaaaa accaaaaggt tagaggcgca tacagcgaca ccctgcagcc
201 GAAAACTCCA AAGGCGGAAT CTATTGGGAA GCTCCCAAAA GCAGCGGCCC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00405 Mean Expected Number 0.008 -strand +12 : +5 TTTGGAGT
AC RSP00864 Mean Expected Number 0.001 -strand -65 : -73 AGAGAGAGA
AC RSP00865 Mean Expected Number 0.001 -strand -75 : -83 GGAGAGAGA
AC RSP01640 Mean Expected Number 0.005 +strand -68 : -59 CTcTGTCTCT
Totally 4 motifs of 4 different REs have been found
Description of REs found
387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1
1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown
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