> PLPR0378 ..AC:D38050.1 ..OS:Populus kitakamiensis ..GENE:prxA3a ..PROD:peroxidase ..[ -200: +51] ..CDS: +28 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.35 C - 0.19
1 atttatttca atggtgtggt ggttacgtta tcacatggtt caagaccacg
51 taatacaata tacacgtgct cttatcatca aatcaacgaa gtctttcgtc
101 gtcatcgata ctcatatcac ttctgcgatg tgggcacatt ttgtgtatga
151 ttttattgct ccataactac attccccagc atcactggtt tattaatcga
201 GGGAAAGAGT GCTTTTTTTG TTTTCAAAAT GATGGTAGAT AAAGCAATGC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00524 Mean Expected Number 0.008 +strand -139 : -133 ACACGTG
AC RSP00817 Mean Expected Number 0.004 +strand -140 : -131 TACACGTGCT
AC RSP00974 Mean Expected Number 0.002 +strand -140 : -131 TACACGTGCt
AC RSP00996 Mean Expected Number 0.004 -strand -114 : -123 GTTGATTTGA
AC RSP01072 Mean Expected Number 0.010 -strand -147 : -156 ATTACGTGgT
AC RSP01134 Mean Expected Number 0.003 +strand -163 : -154 GTTCaAGACC
AC RSP01221 Mean Expected Number 0.003 -strand -176 : -183 TAACCACC
Totally 7 motifs of 7 different REs have been found
Description of REs found
500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF
897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981
917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2)
990. Group TF: PvAlf /AC: RSP01072//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1d /TF: PvAlf ||Identical REs AC: RSP01154
1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2
1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown
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