> PLPR0379 ..AC:D38051.1 ..OS:Populus kitakamiensis ..GENE:prxA4a ..PROD:peroxidase ..[ -200: +51] ..CDS: +32 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.32 C - 0.19
1 acccaaggaa actaattgcc atatccatcc ccacatacgt gtacgtatcc
51 atgttatcag gactgtgact gtaaattaaa taaatatgtt tagttctatt
101 gtatatttgt atgggaATTG Taggcagcgt gtcatagctt ccaaacctct
151 ttgcaactct ataattgaga acttctatga atcctcattc aagctgtgaa
201 CACTGAAAAC ATCATTTTGT ATACAAGAGA AAATGAAGCT TTCAAAACTT
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00103 Mean Expected Number 0.005 +strand -170 : -161 cCACATACGT
AC RSP00331 Mean Expected Number 0.006 +strand -156 : -148 GTATCCATG
AC RSP00979 Mean Expected Number 0.006 -strand -87 : -96 CCATACAAaT
AC RSP01288 Mean Expected Number 0.004 +strand -166 : -159 ATACGTGT
AC RSP01550 Mean Expected Number 0.000 +strand -165 : -154 TACGTGTACGTa
Totally 5 motifs of 5 different REs have been found
Description of REs found
101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown
317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F
901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown
1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown
1389. Group RE: ABRE3a/3b /AC: RSP01550//OS: Sorghum bicolor; Sorghum vulgare /GENE: Sbdhn2/RE: ABRE3a/3b /TF: unknown
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