> PLPR0380 ..AC:Z28347.1 ..OS:Hordeum vulgare (NK 1558) ..GENE:plastocyanin ..PROD:plastocyanin ..[ -200: +51] ..CDS: +122 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.23 G - 0.23 T - 0.27 C - 0.27
1 acatgcatgt ggagatatat atatatggat gggatgatat tgggctacct
51 cacctcatcc ggatggagag gcggcagcca atcgggcgcc ggcatccaga
101 ttagctaggt taccgtttat ccccaccacC CAATccttgt gcgtacgtgc
151 tctgatctga tgggTATAAA TCcaagcagg cagcaccttg gcctagcttt
201 ATCTATCCTT ACTCTTTTCC AGCCACTTAA CACTTGGCTA GGCTAGCTCT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00108 Mean Expected Number 0.004 +strand -199 : -192 CATGCATG
AC RSP00108 Mean Expected Number 0.004 -strand -192 : -199 CATGCATG
AC RSP00916 Mean Expected Number 0.005 -strand -142 : -151 GATGAGGTGA
AC RSP01470 Mean Expected Number 0.008 +strand -200 : -191 aCATGCATGT
AC RSP01470 Mean Expected Number 0.006 -strand -191 : -200 aCATGCATGT
Totally 5 motifs of 3 different REs have been found
Description of REs found
106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452
847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2
1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2)
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