> PLPR0383 ..AC:X96999.1 ..OS:Phaseolus vulgaris ..GENE:Ypr10 ..PROD:intracellular pathogenesis related protein ..[ -200: +51] ..CDS: +69 ..TSS:201 (+1) # Alternative TSS(s): +8 +10 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.34 C - 0.20
1 atgatacata tgctcacgtt ttaataagat ttgtttattt ggataaagag
51 aatgttcttg ttcttggtaa acagatgatg gctccgacaa ccttgtttca
101 gtgtgtcagc agcttcacac tatggtattc atagaaACAA Tagcacaatc
151 acaccaaagt ttgtggtTAT AAATAgaagg cagtcctctg gcaaataccc
201 ACACAGCAAA CATCTTCTCC TTCTCTTCTG ATATTATATA TTCTTCCATT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00038 Mean Expected Number 0.001 +strand -39 : -28 TGTGGTTATAaA
AC RSP00332 Mean Expected Number 0.007 +strand -79 : -72 ATGGTATT
AC RSP01017 Mean Expected Number 0.006 +strand -68 : -61 AGAAACAA
AC RSP01094 Mean Expected Number 0.002 +strand -165 : -154 TAtTTGGATAAA
Totally 4 motifs of 4 different REs have been found
Description of REs found
37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs
318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F
942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF
1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1
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