> PLPR0386 ..AC:X52572.1 ..OS:Hordeum vulgare ..GENE:(1-3,1-4)-beta-D-glucanase (EC 3.2.1.73) ..PROD:(1-3,1-4)-beta-D-glucanase ..[ -200: +51] ..CDS: +91 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.27 G - 0.25 T - 0.18 C - 0.29
1 ctggtgtacc ggataacctc tgcccaccac cagacacaca ctgtgagaag
51 gcggtgacgc atgcaaacca gcctaggtag tcaatcgcaa caggctaaat
101 aaatgtcgct ggaggcgttg ggcctgcgct cccgagtggA TTGGaccgaa
151 ctatgtctcc tcggatccTA TATAAGgggc ctgcaccccg ttgtggcctc
201 ACCAGAAAAG AAACAACAAG AGCTTTACAG AGAGCCTTGG CATCACCCAC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00146 Mean Expected Number 0.008 -strand -26 : -32 TTATATA
AC RSP00394 Mean Expected Number 0.009 -strand +29 : +23 TGTAAAG
AC RSP00842 Mean Expected Number 0.004 +strand -41 : -34 CTCGGATC
AC RSP01017 Mean Expected Number 0.007 +strand +9 : +16 AGAAACAA
AC RSP01640 Mean Expected Number 0.002 +strand -50 : -41 CTATGTCTCc
AC RSP01710 Mean Expected Number 0.007 -strand -24 : -33 CCTTATATAG
Totally 6 motifs of 6 different REs have been found
Description of REs found
142. Group RE: TATA1 /AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: TATA1 /TF: unknown
377. Group TF: PBF-1 /AC: RSP00394//OS: Zea mays /GENE: gamma-27kDa zein/RE: P-box (s) /TF: PBF-1 ||Identical REs AC: RSP00396 RSP00429 RSP01402
787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown
942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF
1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown
1518. Group TF: RIN /AC: RSP01710//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Intermediate /TF: RIN
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