> PLPR0386 ..AC:X52572.1 ..OS:Hordeum vulgare ..GENE:(1-3,1-4)-beta-D-glucanase (EC 3.2.1.73) ..PROD:(1-3,1-4)-beta-D-glucanase ..[ -200:  +51]  ..CDS:  +91 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.27   G -  0.25   T -  0.18   C -  0.29

      1  ctggtgtacc ggataacctc tgcccaccac cagacacaca ctgtgagaag
     51  gcggtgacgc atgcaaacca gcctaggtag tcaatcgcaa caggctaaat
    101  aaatgtcgct ggaggcgttg ggcctgcgct cccgagtggA TTGGaccgaa
    151  ctatgtctcc tcggatccTA TATAAGgggc ctgcaccccg ttgtggcctc
    201  ACCAGAAAAG AAACAACAAG AGCTTTACAG AGAGCCTTGG CATCACCCAC
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00146   Mean Expected Number 0.008   -strand    -26 :  -32   TTATATA
AC RSP00394   Mean Expected Number 0.009   -strand    +29 :  +23   TGTAAAG
AC RSP00842   Mean Expected Number 0.004   +strand    -41 :  -34   CTCGGATC
AC RSP01017   Mean Expected Number 0.007   +strand     +9 :  +16   AGAAACAA
AC RSP01640   Mean Expected Number 0.002   +strand    -50 :  -41   CTATGTCTCc
AC RSP01710   Mean Expected Number 0.007   -strand    -24 :  -33   CCTTATATAG

  Totally       6 motifs of     6 different REs have been found


Description of REs found

  142. Group RE: TATA1 /AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: TATA1 /TF: unknown
  377. Group TF: PBF-1 /AC: RSP00394//OS: Zea mays /GENE: gamma-27kDa zein/RE: P-box (s) /TF: PBF-1 ||Identical REs AC:  RSP00396  RSP00429  RSP01402
  787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown
  942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF
 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown
 1518. Group TF: RIN /AC: RSP01710//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Intermediate /TF: RIN

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