> PLPR0387 ..AC:AF203033.1 ..OS:Chlamydomonas reinhardtii ..GENE:NIT1 (Nia1) ..PROD:nitrate reductase ..[ -200:  +51]  ..CDS: +312 ..TSS:201 (+1) # Alternative TSS(s): +15 +19 +17 |Taxon: Chlorophyta |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.19   G -  0.33   T -  0.21   C -  0.27

      1  ggagctcgat ggccccgggt tgtttggggc gtccgcctct cgcgctattc
     51  tgagctggag accgaggcgc atgaaaatgc attcgcttcc ataggacgct
    101  gcATTGTggc ttgaaggttc aagggaaggg ttcaaacgac cccgccgtac
    151  gaacttttgt cggggggcgc tcccggcccc gggctcttgt gcgcgcatta
    201  GGGCTTCGGG TCGCAAGCAA GACGATACAG GAACCGACCA ATCGATAGTC
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00090   Mean Expected Number 0.000   +strand   -120 : -102   ATTCGCTTCCATAGGACGC
AC RSP00091   Mean Expected Number 0.000   +strand    -76 :  -65   GAAGGGTTCAAA
AC RSP00506   Mean Expected Number 0.000   +strand    -33 :  -10   CGCTCCCGGCCCCGGGCTCTTGTG
AC RSP00507   Mean Expected Number 0.000   +strand    -51 :  -33   CGAACTTTTGTCGGGGGGC
AC RSP01020   Mean Expected Number 0.004   +strand   -130 : -124   ATGAAAA
AC RSP01233   Mean Expected Number 0.009   +strand    +16 :  +22   AGCAAGA

  Totally       6 motifs of     6 different REs have been found


Description of REs found

   88. Group RE: ARE 120/100 /AC: RSP00090//OS: Chlamydomonas reinhardtii /GENE: Nia1/RE: ARE 120/100 /TF: unknown
   89. Group RE: ARE 76/65 /AC: RSP00091//OS: Chlamydomonas reinhardtii /GENE: Nia1/RE: ARE 76/65 /TF: unknown
  482. Group RE: ARE 33/8 /AC: RSP00506//OS: Chlamydomonas reinhardtii /GENE: Nia1/RE: ARE 33/8 /TF: unknown
  483. Group RE: ARE 51/33 /AC: RSP00507//OS: Chlamydomonas reinhardtii /GENE: Nia1/RE: ARE 51/33 /TF: unknown
  945. Group TF: GAPF /AC: RSP01020//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 2 /TF: GAPF
 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown