> PLPR0395 ..AC:AY137518.1 ..OS:Hordeum vulgare ..GENE:hir1 ..PROD:hypersensitive-induced reaction protein 1 ..[ -200:  +51]  ..CDS:+1671 ..TSS:201 (+1) # Alternative TSS(s): +9 |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.29   G -  0.24   T -  0.25   C -  0.22

      1  tataataaat ttgatcattt aaaaaatatt gtataaggtt gggtttatgt
     51  taaaaccata tgcataactg gtggggtcaa catggtatcc aaaccctatt
    101  catccgggct ggaatcccca tccgttattt atttccgttt tcctcgacgc
    151  gcaagaactt ttctcccagc ttataagtgg cggaggaggg gaggcggaag
    201  AAGAAGCCAA CCCAACCAAG CGTTCAAGCA GAGCAGACGA CCGGCCGGAC
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00230   Mean Expected Number 0.008   -strand   -156 : -165   AACCcAACCT
AC RSP00331   Mean Expected Number 0.008   -strand   -112 : -120   GATACCATG
AC RSP00397   Mean Expected Number 0.003   +strand    -25 :  -18   AGTGGCGG
AC RSP00621   Mean Expected Number 0.001   -strand    -10 :  -18   CCCCTCCTC
AC RSP01073   Mean Expected Number 0.001   +strand    +25 :  +33   CAAGCAGAG
AC RSP01345   Mean Expected Number 0.000   -strand   -155 : -165   AAACCCAaCCT
AC RSP01347   Mean Expected Number 0.000   -strand   -155 : -165   AAaCCCAACCT

  Totally       7 motifs of     7 different REs have been found


Description of REs found

  223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1
  317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F
  379. Group RE: CDE /AC: RSP00397//OS: Nicotiana tabacum /GENE: RNP2/RE: CDE /TF: unknown
  597. Group RE: C-rich Q /AC: RSP00621//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich Q /TF: unknown
  991. Group TF: PvAlf /AC: RSP01073//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em2b /TF: PvAlf
 1228. Group RE: IMH2 /AC: RSP01345//OS: Cucumis sativus /GENE: ms/RE: IMH2 /TF: unknown
 1230. Group RE: IMH2 /AC: RSP01347//OS: Cucumis sativus /GENE: ICL/RE: IMH2 /TF: unknown