> PLPR0397 ..AC:AY137517.1 ..OS:Hordeum vulgare GENE:hir3 ..PROD:hypersensitive-induced reaction protein 3 ..[ -200:  +51]  ..CDS: +244 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.22   G -  0.23   T -  0.33   C -  0.23

      1  cgcccaagtg ggtgatcagt gaattgctta ggatgcgtat actcatgctg
     51  attggtctca tttgtctccg tccaagtgga tacagataac aacgggtata
    101  ATTGAacagg ctgtagacct gtagtgtgcc cttgcttata gggcgcattg
    151  cagatacctg ccttcattgt aaagatccag cttatttgtc atttggcctt
    201  ATCCTTGTAC CAGCTGAGCT TTTCTCTTTT GCCCTGCCAA TTCAAGTTTC
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00195   Mean Expected Number 0.002   +strand     +2 :  +12   TCCtTGTACCA
AC RSP00243   Mean Expected Number 0.005   +strand    -75 :  -68   GTGCCCTT
AC RSP00522   Mean Expected Number 0.010   -strand   -122 : -128   CCACTTG
AC RSP00522   Mean Expected Number 0.010   -strand   -190 : -196   CCACTTG
AC RSP00654   Mean Expected Number 0.006   -strand   -187 : -196   CACCCACTTg
AC RSP00683   Mean Expected Number 0.004   +strand   -130 : -121   tCCAAGTGGA
AC RSP00713   Mean Expected Number 0.010   +strand    +11 :  +17   CAGCTGA
AC RSP00867   Mean Expected Number 0.002   -strand    -54 :  -61   TGCGCCCT
AC RSP00894   Mean Expected Number 0.003   +strand    +39 :  +46   AATTCAAG
AC RSP01509   Mean Expected Number 0.002   -strand   -145 : -153   ACCAATCAG

  Totally      10 motifs of     9 different REs have been found


Description of REs found

  188. Group RE: Box II /AC: RSP00195//OS: Oryza sativa /GENE: Gt2/RE: Box II /TF: unknown
  236. Group TF: MNF1; MNB1a; MNB1b /AC: RSP00243//OS: Zea mays /GENE: PEPC/RE: MNF1 BS core /TF: MNF1; MNB1a; MNB1b
  498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2
  628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown
  652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3
  679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC
  803. Group RE: GCC-box /AC: RSP00867//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: GCC-box /TF: unknown
  825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family
 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC:  RSP01510