> PLPR0399 ..AC:X06928 ..OS:Glycine max ..GENE:lox-3 ..PROD:lipoxygenase-3 ..[ -200:  +51]  ..CDS:  +52 |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.29   G -  0.19   T -  0.34   C -  0.18

      1  gtaactacta actagtaaga aggaaatgtt gaatataata attattgatt
     51  tttatctggt ttggttcttt gcatgcacgt atatgacagt ttggtttgca
    101  cATTGGagtc tgagtccgct acaagacatt tatgtatcat catcttcgtt
    151  tcttagtctt cctccttaat TATAAATAcc accaagggct gtgcttggca
    201  TCCTCACCCA AAAAAAAAGA CCATACATAG TAGTGTTGGT GGGTTGCAAA
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00016   Mean Expected Number 0.007   +strand   -129 : -123   CATGCAC
AC RSP00509   Mean Expected Number 0.001   +strand    -30 :  -19   TATAAATACCAc

  Totally       2 motifs of     2 different REs have been found


Description of REs found

   15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown
  485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown

Download This Page
Download Promoter Sequence in FASTA Format