> PLPR0401 ..AC:X01104 ..OS:Glycine max ..GENE:hs6871 ..PROD:heat-shock protein ..[ -200: +51] ..CDS: +104 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.30 C - 0.19
1 accaatgtct ggttaagatg gtccaatccc gaaacttcta gttgcggttc
51 gaagaagtcc agaatgtttc tgaaagtttc agaaaattct agttttgaga
101 ttttcagaag tacggcatga tgatgcataa caaggacttt ctcgaaagta
151 ctatattgct cctctacatc atTTTAAATA ccccatgtgt cctttgaaga
201 CACATCACAG AAAGAAGTGA AGGCATCGTT AGCAGTTTTG TAGATTCAAC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00857 Mean Expected Number 0.006 -strand -180 : -189 CCATCTtAAC
AC RSP01016 Mean Expected Number 0.007 -strand -130 : -137 AGAAACAT
AC RSP01084 Mean Expected Number 0.001 -strand -153 : -161 ACCGCAACT
AC RSP01284 Mean Expected Number 0.000 +strand -76 : -41 GCATAACAAGGACTTTCTCGAAAGTACTATATTGCT
Totally 4 motifs of 4 different REs have been found
Description of REs found
793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown
941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF
1002. Group RE: DRE1 /Group TF: HaDREB2 /AC: RSP01084//OS: Helianthus annuus /GENE: sHSP/RE: DRE1 /TF: HaDREB2
1181. Group RE: HSE-like motif /AC: RSP01284//OS: Glycine max /GENE: hsp17.3-B/RE: HSE-like motif /TF: unknown
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