> PLPR0403 ..AC:M96324.1 ..OS:Lycopersicon esculentum ..GENE:LCA1 ..PROD:Ca2+-ATPase ..[ -200: +51] ..CDS:+1392 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.37 C - 0.18
1 ttctcttgta accaaacgtc attcaacatt gctaatcttt ttattcctcc
51 taatgacttc ctatatttaa ataaataaag ttgagtatat ataaaaaata
101 atttaatgat ttataATTGT atataatata gtatatacag tttacgcgta
151 cggctgtcta cttgtctccg gctactacca cataaaagtc aaactccaat
201 TTTAAGGACA TTATGGTAAA TTCATTATCC ACTTCGATTT TATAATCCCA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00006 Mean Expected Number 0.004 -strand -97 : -110 AAATTATTTTtTAT
AC RSP00068 Mean Expected Number 0.004 -strand -35 : -44 GACAaGTAGA
AC RSP01654 Mean Expected Number 0.005 -strand -178 : -187 AATGACGTTT
Totally 3 motifs of 3 different REs have been found
Description of REs found
6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown
67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown
1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5
Download This Page
Download Promoter Sequence in FASTA Format