> PLPR0406 ..AC:U63118.1 ..OS:Lycopersicon esculentum ..GENE:tomloxB ..PROD:lipoxygenase tomloxB ..[ -200: +51] ..CDS: +65 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.41 C - 0.14
1 aaacttccat atttttggat gctttgggtt ctttttgtgt gttttatttg
51 acatcaccat cattatatta actaatcaga caaatttata cactatgcat
101 accaaactta gtgaaagctt aaaaattata aatttgtcag aataattctt
151 ttaactaata atttttggTA TAAATAtgag atgtttaaac tcgaaacctc
201 ACGACTAAAA TCTATCTTTT CTTTTCTTAA TTAAAAAAAA AATATTTCTG
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00129 Mean Expected Number 0.008 +strand -1 : +5 CACGAC
AC RSP00574 Mean Expected Number 0.008 +strand -63 : -56 CAGAATAA
AC RSP01103 Mean Expected Number 0.004 +strand -7 : +1 AAACCTCA
Totally 3 motifs of 3 different REs have been found
Description of REs found
127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown
550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown
1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown
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