> PLPR0409 ..AC:X87323.1 ..OS:Capsicum annuum ..GENE:PCEL1 (cellulase) ..PROD:beta-1,4-endoglycanohydrolase ..[ -200: +51] ..CDS: +74 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.34 C - 0.14
1 acggccctcg aattatgaag aaaatcaaga gagaaactga tttatgtcca
51 tattgtttat caataaaaaa ttatgttttt ttcatatttt aatttgtgat
101 tgcaatttat tattgtgtaa aaaaATTGTg ggaaacaaaa atctctaata
151 ggcaatagct cacatgcccT ATAAATAcca ccataacatt atcaaacttt
201 CTAACATATA GACATAAATA TTAAATAGTC ATAAACCATA TATGTTATAT
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00039 Mean Expected Number 0.009 +strand -112 : -102 TtAATTTGTGA
AC RSP00509 Mean Expected Number 0.003 +strand -31 : -20 TATAAATACCAc
AC RSP01301 Mean Expected Number 0.002 +strand -32 : -23 CTATAAATAC
Totally 3 motifs of 3 different REs have been found
Description of REs found
38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs
485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302
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