> PLPR0410 ..AC:X13509.1 ..OS:Ipomoea batatas Lam. cv. ..GENE:gSPO-A1 ..PROD:sporamin A ..[ -200: +51] ..CDS: +72 ..TSS:201 (+1) ... |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.28 C - 0.22
1 atcccataag acaccgtaag tgttccatcc atcggtcaat cactgtgtag
51 ttaaatcttc aagtaactaa gtaattgtgt tccacgatga aaattcttaa
101 tacaaaaaga aaaaagcaaa ataatcttaa aattgtacaa aaaACAATaa
151 ttcaacctta tctcttgttg tctataaatt ggatgcatgc atgagagccc
201 AACACAACAC ACCAACAAAT TAAACATCAT TACCTCTTAG CTTTCTCCCA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00108 Mean Expected Number 0.002 +strand -15 : -8 CATGCATG
AC RSP00108 Mean Expected Number 0.002 -strand -8 : -15 CATGCATG
AC RSP01074 Mean Expected Number 0.001 +strand -16 : -7 GCATGCATGa
AC RSP01074 Mean Expected Number 0.001 -strand -7 : -16 tCATGCATGC
AC RSP01470 Mean Expected Number 0.009 -strand -7 : -16 TCATGCATGc
AC RSP01604 Mean Expected Number 0.002 +strand -159 : -152 ACTGTGTA
Totally 6 motifs of 4 different REs have been found
Description of REs found
106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452
992. Group TF: PvAlf /AC: RSP01074//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Sph /TF: PvAlf
1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2)
1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1
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