> PLPR0411 ..AC:X13510.1 ..OS:Ipomoea batatas Lam. cv. ..GENE:gSPO-B1 ..PROD:sporamin B ..[ -200: +51] ..CDS: +67 ..TSS:201 (+1) ... |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.40 G - 0.11 T - 0.25 C - 0.24
1 aactaaagac cggtaaaaag caatactaag ctagtcactc aacacatgag
51 aaataaaatt atttaattct tatgggacac cttatctgaa aacgacgtag
101 catttgtaat attacctagc taccacatga gtaattaCCA ATaataccct
151 catgccctta tctcatgtcc tctataaatt gcatgcatga gctgagagct
201 AAACACAACA CAACACAACA CACCAACAAA CATCATATAT AATTAACCTC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00107 Mean Expected Number 0.005 -strand -16 : -22 CATGCAA
AC RSP00108 Mean Expected Number 0.002 +strand -19 : -12 CATGCATG
AC RSP00108 Mean Expected Number 0.002 -strand -12 : -19 CATGCATG
AC RSP01074 Mean Expected Number 0.001 +strand -20 : -11 GCATGCATGa
AC RSP01074 Mean Expected Number 0.001 -strand -11 : -20 TCATGCATGC
AC RSP01469 Mean Expected Number 0.010 -strand -150 : -159 TCtCATGTGT
AC RSP01470 Mean Expected Number 0.010 -strand -11 : -20 TCATGCATGc
Totally 7 motifs of 5 different REs have been found
Description of REs found
105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown
106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452
992. Group TF: PvAlf /AC: RSP01074//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Sph /TF: PvAlf
1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2)
1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2)
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