> PLPR0412 ..AC:AF025434.1 ..OS:Papaver somniferum ..GENE:tydc7 ..PROD:tyrosine/dopa decarboxylase ..[ -200: +51] ..CDS: +103 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.39 G - 0.10 T - 0.29 C - 0.22
1 tctcttttta ttattcaaaa aaaaaaaaaa aagacttaaa ttcagtagtg
51 ccagatgaat atacaataat aattaaaaaa atgtttcacg tgggtggaac
101 tggaaccact aaatttcctc attatcaaaa tttccatagc aaactctctc
151 cggtcatcaa actccccTAT ATAAAtcccc catttcctct atctcacttc
201 ACAACTTGTA AAGAAAAGAA AAACAAAACC CTTTCGTTCT TGCTTGCAAA
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00022 Mean Expected Number 0.007 -strand -187 : -195 ATAATAAAA
AC RSP00144 Mean Expected Number 0.002 -strand -105 : -110 CACCCA
AC RSP00187 Mean Expected Number 0.006 -strand -104 : -108 CCACC
AC RSP00640 Mean Expected Number 0.000 +strand -115 : -108 TCACGTGG
AC RSP01233 Mean Expected Number 0.009 -strand +44 : +38 AGCAAGA
Totally 5 motifs of 5 different REs have been found
Description of REs found
21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1
140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3
181. Group RE: CCACC box /AC: RSP00187//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CCACC box /TF: unknown
616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641
1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown
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