> PLPR0414 ..AC:AB017153.1 ..OS:Atropa belladonna ..GENE:AbH6H ..PROD:hyoscyamine 6 beta-hydroxylase ..[ -200: +51] ..CDS: +73 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.38 C - 0.16
1 ttatggtaat taatatttta gcaggttatt gatcctttca tttgttaaat
51 cataaaaaat cttatcaaaa tatttaatac atgaatggag gggtcattaa
101 cgtgccaaat ttatgtagtt tgagctgatt atattaaatt aacctcaagg
151 tactgggtcc ataacacTAT AAATAggcct ttagctcttc atagtacatt
201 ACCAAATCTT CACCATATCC ACAACATAAT TTCTTTCTTA TTTGAGACTT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00858 Mean Expected Number 0.008 +strand -196 : -189 GGTAATTA
AC RSP00860 Mean Expected Number 0.007 -strand +38 : +30 AGAAAGAAA
AC RSP00881 Mean Expected Number 0.006 -strand -168 : -177 ATCAAtAACC
AC RSP01015 Mean Expected Number 0.001 -strand -157 : -166 CAAATGAAAG
AC RSP01296 Mean Expected Number 0.009 +strand -34 : -26 CTATAAATA
Totally 5 motifs of 5 different REs have been found
Description of REs found
794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1
796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1
817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family
940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
Download This Page
Download Promoter Sequence in FASTA Format