> PLPR0415 ..AC:AJ224116.1 ..OS:Helianthus annuus ..GENE:ds10 (lea group 1) ..PROD:late embryogenesis-abundant protein ..[ -200:  +51]  ..CDS:  +33 ..TSS:201 (+1) # Alternative TSS(s): +9 |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.35   G -  0.13   T -  0.25   C -  0.26

      1  gactatctga gatagctaca acctaacgac ttaaggtgag gacacgtgta
     51  tctccaaaac ccacttcgtc acccttacca ccacgtcatc ataccacgtg
    101  ccaacatgca tgctagtatc ttctctacta tacacatact tatgtactat
    151  atatattcac caaaattaca tgcatgttag caccctcaat tgtacaacac
    201  AACTTAACAA CTTAAGTTAA AAGAGTGAAC AAAATGGCAT CACAACAGGG
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00050   Mean Expected Number 0.000   -strand   -152 : -163   ACaCGTGTCCTC
AC RSP00062   Mean Expected Number 0.000   -strand    -89 : -106   CATGCA-- +6 bp --CACGTG
AC RSP00108   Mean Expected Number 0.002   +strand    -96 :  -89   CATGCATG
AC RSP00108   Mean Expected Number 0.002   +strand    -32 :  -25   CATGCATG
AC RSP00108   Mean Expected Number 0.002   -strand    -25 :  -32   CATGCATG
AC RSP00108   Mean Expected Number 0.002   -strand    -89 :  -96   CATGCATG
AC RSP00214   Mean Expected Number 0.005   -strand   -113 : -120   TGACGTGG
AC RSP00215   Mean Expected Number 0.005   +strand   -120 : -113   CCACGTCA
AC RSP00340   Mean Expected Number 0.002   -strand   -151 : -160   TaCACGTGTC
AC RSP00524   Mean Expected Number 0.009   +strand   -159 : -153   ACACGTG
AC RSP00524   Mean Expected Number 0.007   -strand   -152 : -158   ACACGTG
AC RSP00597   Mean Expected Number 0.005   -strand     +8 :   -4   GTTAAgTTGTGT
AC RSP00615   Mean Expected Number 0.007   -strand   -161 : -166   CTCACC
AC RSP00913   Mean Expected Number 0.006   -strand   -111 : -120   GATGACGTGG
AC RSP00916   Mean Expected Number 0.006   -strand   -111 : -120   GATGACGTGG
AC RSP00966   Mean Expected Number 0.002   -strand    -99 : -108   GGCACGTGgT
AC RSP00997   Mean Expected Number 0.008   -strand   -111 : -120   GATGACGTGG
AC RSP01003   Mean Expected Number 0.009   -strand     -8 :  -17   ACAATTgAGG
AC RSP01035   Mean Expected Number 0.009   -strand   -154 : -160   ACGTGTC
AC RSP01074   Mean Expected Number 0.001   +strand    -97 :  -88   aCATGCATGC
AC RSP01074   Mean Expected Number 0.001   -strand    -88 :  -97   GCATGCATGt
AC RSP01237   Mean Expected Number 0.007   +strand    -54 :  -45   CTaTATATAT
AC RSP01256   Mean Expected Number 0.002   +strand   -159 : -152   ACACGTGT
AC RSP01256   Mean Expected Number 0.002   -strand   -152 : -159   ACACGTGT
AC RSP01275   Mean Expected Number 0.005   +strand   -121 : -112   aCCACGTCAT
AC RSP01470   Mean Expected Number 0.005   +strand    -33 :  -24   aCATGCATGT
AC RSP01470   Mean Expected Number 0.010   -strand    -24 :  -33   aCATGCATGT
AC RSP01470   Mean Expected Number 0.010   -strand    -88 :  -97   gCATGCATGT

  Totally      28 motifs of    20 different REs have been found


Description of REs found

   49. Group RE: Ce3 /AC: RSP00050//OS: Hordeum vulgare /GENE: HVA1 gene/RE: Ce3 /TF: unknown
   61. Group TF: ABI3 /AC: RSP00062//OS: Brassica napus /GENE: napA/RE: RY/G (box 1 & box 2) /TF: ABI3
  106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC:  RSP01169  RSP01452
  207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC:  RSP01257  RSP01474
  208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38)
  325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC:  RSP00965
  500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
  573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown
  591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown
  844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2
  847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2
  889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF
  918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2)
  928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO
  960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1
  992. Group TF: PvAlf /AC: RSP01074//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Sph /TF: PvAlf
 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown
 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1
 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown
 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2)