> PLPR0416 ..AC:AF354454.1 ..OS:Capsicum annuum ..GENE:CaSIG4 ..PROD:putative acyl-CoA-synthetase ..[ -200: +51] ..CDS: +117 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.33 G - 0.08 T - 0.36 C - 0.22
1 tactttatta ataactaagg tgttaaatat taaaaaaaat taacttaatt
51 taagtatcta aataaaatac cgtatttaaa taaatttcag ggcgcgtggt
101 tgtgtgcact aagccttgat atttccaacc aacttccATT GTtcccatca
151 cttgcaccgc ctccaatcTA TATATAcctc acccaccgat ttccatttct
201 CAACACCATT TCAATAATTC TCCTACTACT CTTTAATTTC ATTAAAAATT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00535 Mean Expected Number 0.002 +strand -42 : -27 GCCT-- +6 bp --TATATA
AC RSP01217 Mean Expected Number 0.001 +strand -38 : -27 CCAATCTATATA
AC RSP01559 Mean Expected Number 0.003 -strand -104 : -109 ACGCGC
AC RSP01686 Mean Expected Number 0.007 -strand -95 : -100 CACACA
Totally 4 motifs of 4 different REs have been found
Description of REs found
511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown
1124. Group TF: LFY /AC: RSP01217//OS: Brassica oleracea /GENE: BoCRC/RE: CL2 /TF: LFY
1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5
1504. Group RE: CARE D /AC: RSP01686//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE D /TF: unknown
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